67 lines
2.1 KiB
Plaintext
67 lines
2.1 KiB
Plaintext
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USAGE:
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ThisIsAVeryLongProgramNameDesignedToTestSpacePrintWhichUsedToHaveProblem
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sWithLongProgramNamesIThinkItIsNowL
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ongEnough [-l <int>] [-u <float
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lte 1>] [-b <float lte 1>] [-z
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<filename>] [-x <filename>] [-s
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<name string>] [-d] [-g <negative
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int>] [-f <negative int>] -n <homer
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|marge|bart|lisa|maggie> ... [--]
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[--version] [-h] <1|2|3> ...
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Where:
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-l <int>, --limit <int>
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Max number of alignments allowed
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-u <float lte 1>, --upperBound <float lte 1>
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upper percentage bound
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-b <float lte 1>, --lowerBound <float lte 1>
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lower percentage bound
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-z <filename>, --filename2 <filename>
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Sequence 2 filename (FASTA format)
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-x <filename>, --filename1 <filename>
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Sequence 1 filename (FASTA format)
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-s <name string>, --scoring--Matrix <name string>
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Scoring Matrix name
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-d, --isDna
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The input sequences are DNA
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-g <negative int>, --gap-Extend <negative int>
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The cost for each extension of a gap
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-f <negative int>, --gapCreate <negative int>
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The cost of creating a gap
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-n <homer|marge|bart|lisa|maggie>, --name <homer|marge|bart|lisa
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|maggie> (accepted multiple times)
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(required) Name to print. This is a long, nonsensical message to test
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line wrapping. Hopefully it works.
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--, --ignore_rest
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Ignores the rest of the labeled arguments following this flag.
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--version
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Displays version information and exits.
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-h, --help
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Displays usage information and exits.
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<1|2|3> (accepted multiple times)
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Number of times to print
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Command description message. This is a long multi-line message meant to
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test line wrapping. This is more text that doesn't really do anything
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besides take up lots of space that otherwise might be used for something
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real. That should be enough, don't you think?
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